Whole-system duct and dryer vent check with before-and-after photos - you see exactly what came out of your vents
That "$99 whole-house special" is a bait ad - the real number appears once they are in your hallway, or the "clean" is a shop-vac at the register. We photograph the inside of your ducts before and after instead.
Fast, Reliable HVAC Cleaning Across Bonita Springs
HVAC cleaning in Bonita Springs typically runs between $450 and $1,100 for a full system, depending on what the camera finds inside the duct runs. If you’re dealing with a musty smell when the AC kicks on in November, that’s usually not dust - it’s microbial growth that incubated through the summer while the house sat empty. Our HVAC Cleaning crews work throughout Bonita Springs weekly, from Bonita Bay down to the Imperial River corridor, and we bring the documentation to prove what was found and what was removed. Call (806) 606-6902 and you’ll get a written price before anyone touches a panel.
Why CleanRun Air Duct Cleaning Is Bonita Springs’s Preferred HVAC Cleaning Company
We’re not the cheapest outfit in Bonita Springs, and we won’t pretend otherwise. What we do is show you the inside of your ductwork before and after, with a photo record you keep. That matters in a city where a lot of homes went through Hurricane Ian’s brackish floodwater, sat vacant all summer, and then baked at attic temperatures above 130°F for months. What comes out of those flex ducts in November is often black with mold, not grey with dust. We document it, because you shouldn’t have to take anyone’s word for what’s in the air you breathe.
Tomas Reyes, who runs CleanRun Air Duct Cleaning, set the standard on our very first job back in 2013: a written price before work starts, and a camera in every duct run before and after. No exceptions. That’s Haven Standard Clause 1. Our Bonita Springs customers tend to be the ones who’ve already been burned once - a $79 coupon from a flyer, a quick fogging spray that smelled nice for two weeks, then the odor came back. We’ve earned our reputation in this area by doing the job that actually removes the source, not the one that masks it.
The 365-Day Done Right Promise applies here in Bonita Springs exactly as it does everywhere else: if the work isn’t right, we make it right, in writing. No manager approval required. That’s not a marketing line. It’s the terms printed on the work order before you sign it.
Our HVAC Cleaning Services in Bonita Springs

Evaporator Coil Cleaning
In Bonita Springs, the evaporator coil sits inside the air handler and gets coated with a biofilm that thrives in our humidity. A coil that’s never been cleaned forces the system to work harder and leaves condensation dripping into the drain pan, which adds more moisture to the mix. We remove the access panel, photograph the coil, clean it with a professional-grade coil cleaner, and put the before-and-after photos in your job record. A typical evaporator coil clean in Bonita Springs runs $180 to $300 when done as part of a full HVAC cleaning.

Blower Cleaning
The blower wheel is what pushes air past that coil and through every register in the house. When it’s caked with debris - and in post-Ian Bonita Springs homes, that debris can include dried flood sediment - it moves less air and spreads whatever’s on it through the living space. We pull the blower assembly, clean the wheel and housing, and photograph the result. Blower cleaning alone runs $150 to $250 in the Bonita Springs market, and it’s one of the highest-value services for homes with reduced airflow.

Condenser Cleaning
If the inside unit handles air, the outside condenser handles heat. In Bonita Springs, salt air and landscape debris work together to clog condenser fins within a single season, especially on canal-front properties where the breeze carries salt spray. We clean the fins, check the refrigerant lines, and make sure the unit isn’t fighting itself. Condenser cleaning in Bonita Springs runs $120 to $220, and it’s worth doing annually if you’re within a half mile of the Gulf or the bay.

Air Handler Cleaning
This is where we spend most of our time in Bonita Springs, because this is where the post-Ian damage hides. The air handler is the metal cabinet that houses the blower and coil, and in homes along the Imperial River or Spring Creek, floodwater reached these cabinets in 2022. We open the unit, clean and disinfect every internal surface, replace the filter, and run the system to confirm proper airflow. Air handler cleaning in Bonita Springs runs $250 to $450 on its own, and it’s the core of what we do before touching any duct runs.

What happens when you call
- 1
A real person answersNo phone trees - you reach a local pro.
- 2
You get an upfront price rangeHonest numbers before anyone is dispatched.
- 3
A background-checked tech heads outLicensed & insured, dispatched right away.
- 4
You approve before work beginsNothing starts until you say go.
Before
AfterTrusted Brands We Service in Bonita Springs
Most Bonita Springs homes run equipment from Honeywell, Aprilaire, and Guardsman, and our techs know these systems well enough to spot when the problem is the equipment rather than the ductwork. We stock common filters and components for these brands on our service vehicles, which means we’re not scheduling a follow-up visit for a standard part. If your system includes an Aprilaire media cabinet or a Honeywell electronic air cleaner, we’ll clean those as part of the job and photograph the result before closing it back up. Equipment we use on Bonita Springs jobs includes Rotobrush, Nikro, and Abatement Technologies - professional-grade tools anyone can look up independently.
Common HVAC Cleaning Problems We See in Bonita Springs Homes

- Post-Ian mold in flex duct runs. Homes along the Imperial River and Spring Creek corridors took brackish water into the air handler and duct boots in September 2022. Two humid summers later, the inside of those flex ducts often shows active mold growth at the registers, even when the AC still cools fine.
- The snowbird smell. Bonita Springs has one of the largest seasonal populations in Southwest Florida. Homes in Pelican Landing, Bonita Bay, and Spanish Wells sit from May to October with the AC off or set high. Attic duct runs hit 130°F or more, and whatever moisture is trapped inside becomes a mold incubator. The homeowner returns in November and smells it immediately.
- Fogging upsell, not a fix. We hear this story constantly in Bonita Springs: a snowbird comes back to a musty house, pays $200 for a fogging “sanitizer” spray, and two weeks later the odor is back. The problem is that fogging doesn’t remove anything. Mold embedded in the duct liner stays embedded. When the system runs, the odor returns.
- Handyman register cleaning. A homeowner hires someone to “clean the vents,” and the guy wipes the visible registers with a rag. The air handler stays unopened, the supply ducts stay untouched, and the mold in the attic runs - baked in over two vacant summers - remains exactly where it was. This is the most common reason we get called in after another company has already been paid.
Pricing for HVAC Cleaning in Bonita Springs, FL
Here’s what you should expect to pay in the Bonita Springs market, in writing, before work begins. A full HVAC cleaning - air handler, evaporator coil, blower, and all accessible supply and return duct runs - runs $450 to $1,100 depending on system size and what the camera finds. Homes with flood exposure or visible mold at registers land at the higher end, because the job often includes duct section replacement rather than cleaning alone. We will not give you a $79 price and then inflate it from the driveway. Haven Standard Clause 1 is non-negotiable: the written price is the price, and you approve it before a single panel comes off. If you’ve got a quote from another company, bring it. We’ll put our number next to it in writing, for free. Call (806) 606-6902 to get started.
We Also Serve Cities Near Bonita Springs

Our crews serve the full Bonita Springs area plus Estero, Lehigh Acres, Fort Myers, and Cape Coral. The same written-pricing standard and photo documentation apply everywhere we work, including the gated communities in Estero and the canal-front neighborhoods of Cape Coral.
Serving Bonita Springs, FL - Our Local Coverage Area
We’re based in the Bonita Springs area and know this community well. Use the map below to see our service coverage - if you’re nearby, we can almost certainly help.
FAQs - HVAC Cleaning in Bonita Springs

Because floodwater doesn’t stop at the drywall. In homes along the Imperial River and Spring Creek corridor, brackish water reached air handlers and duct boots in September 2022, and whatever was left behind has been sitting in the dark, warm, humid environment inside the ductwork ever since. The AC can still cool fine while the inside of the duct liner is growing mold. Call (806) 606-6902 for a camera inspection if you haven’t had this checked - the estimate is free.
A home left from May to October with the AC off is baking the attic duct runs at temperatures above 130°F. If there’s any moisture in those ducts - from condensation, from a leaky boot, from Ian’s floodwater - that’s six months of uninterrupted mold incubation. Nothing is airing out, because the air isn’t moving. When the AC kicks on in November, the system blows that accumulated growth straight into the living space. This is exactly why November and December are our busiest months in Bonita Springs.
No. A fogging spray is a mist that passes through the ducts and kills some surface spores, but it does not remove the organic material the mold is growing on. In a canal-front home where brackish sediment and flood residue are embedded in the flex duct liner, fogging masks the odor for a few weeks and then the smell returns. Source removal - physically extracting the contaminated material with negative pressure and HEPA filtration - is the only method that actually resolves it. If someone is selling you a fogging upsell as a cure for post-Ian mold, get a second opinion in writing. We’ll provide one free.
Expect the contractor to open the air handler, photograph the inside, and show you what’s actually there before touching anything. Expect negative-pressure extraction so that whatever is removed doesn’t blow back into the house through the registers. Expect the duct runs to be cleaned all the way to the boots, not just at the visible grilles. And expect a written report with before-and-after photos of every run. If any company in Bonita Springs won’t do those four things, the job isn’t NADCA-standard and it isn’t worth paying for.
Because the mold needs time, warmth, and moisture to grow. In the weeks right after Ian, homes were wet but the AC was still running in many cases, which kept air moving. Then the snowbirds left for the season, the AC went off, and the attic reached 130°F or more in the Florida summer. That combination - residual moisture from the flood, no airflow, and intense heat - is a perfect incubator. By November, the mold has had two full summers to establish itself. The homeowner walks in, turns on the AC, and the smell arrives within minutes. That’s the moment we get the call. Call (806) 606-6902 and we’ll send a crew with a camera, a written price, and the right equipment to fix it.
Written by Tomas Reyes, Owner at CleanRun Air Duct Cleaning, serving Bonita Springs since 2013.




Before
After
Before
After